Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs7835032 chr8:143433524 A/G 7.21E-5 100 15.38 15.57 10.87 KM Plot
SKCM rs79133015 chr12:63396838 G/A 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs7938380 chr11:64034866 G/A 1.33E-10 99 14.8 19.67 6.83 KM Plot
SKCM rs79384925 chr18:71938618 C/A 0.000111 100 15.57 12.6 14.7 KM Plot
SKCM rs7939107 chr11:64034773 C/T 1.33E-10 99 14.8 19.67 6.83 KM Plot
SKCM rs79754235 chr12:63425158 T/C 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs8033435 chr15:41436479 C/T 9.61E-5 97 12.9 19.43 15.63 KM Plot
SKCM rs8104386 chr19:56214318 G/A 7.27E-6 99 14.2 21.07 9 KM Plot
SKCM rs818659 chr2:180870893 G/A 3.03E-5 100 15.13 14.23 9 KM Plot
SKCM rs9312850 chr5:155629 C/G 2.07E-5 101 14.7 15.75 9.32 KM Plot
SKCM rs9324583 chr8:143427895 A/C 7.86E-5 99 15.38 15.13 10.87 KM Plot
SKCM rs9376070 chr6:135185868 C/A 1.66E-5 99 15.8 13.28 11.73 KM Plot
SKCM rs9385707 chr6:135168474 T/C 2.55E-5 99 15.18 14.3 11.73 KM Plot
SKCM rs9385708 chr6:135192075 C/T 7.27E-5 98 15.73 13.9 10.97 KM Plot
SKCM rs9399125 chr6:135197908 C/T 9.96E-5 99 15.68 13.9 10.97 KM Plot